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Dataset for: Assessing sequence heterogeneity in Chlorellaceae DNA barcode markers for phylogenetic inference

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General Information Cached
Title
Dataset for: Assessing sequence heterogeneity in Chlorellaceae DNA barcode markers for phylogenetic inference
Type
Compressed File
Main Author
Raja Farhana Raja Khairuddin Dr.
Additional Authors
  • Ee Bhei Wong
  • Nurhaida Kamaruddin
  • Marina Mokhtar
  • Norjan Yusof
Subject
Science
Subject Entry - Topical Term
Sequence heterogeneity, DNA barcode marker, Chlorellaceae species, Phylogenetic inference
Language Code
eng
Bibliographic Details
Publisher
Universiti Pendidikan Sultan Idris
Department
Fakulti Sains dan Matematik
Year of publication
2023
Dissertation Note
Doctoral
Version
v1.0
Funding Info
FRGS
Data Collection
secondary analysis
Genre/Form
Dataset
File Format
xlsx
Software Used
BLAST, Proteinortho, MAFFT v7.4, Modeltest-NG v0.1, RAxML-NG
Identifier
Access Web Resource

Description

This dataset contains Table S2, which reports Kimura 2-parameter (K2P) genetic distances and disparity index (ID) within and between genera of the Chlorellaceae family for the 18S rRNA and ITS DNA barcode markers. For each genus, the table presents the number of sequence pairs (N), the minimum, mean (± standard deviation) and maximum K2P distances, and the percentage of pairs with a significant disparity index.
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